I am trying to create a docker image with miniconda3 intalled. Instead of using directly the base image offered in docker hub, I want to start from scratch by creating my own Dockerfile and putting there the commands of the Dockerfile of the continuumio/miniconda3 image, which are:
FROM debian:latest
# $ docker build . -t continuumio/miniconda3:latest -t continuumio/miniconda3:4.5.11
# $ docker run --rm -it continuumio/miniconda3:latest /bin/bash
# $ docker push continuumio/miniconda3:latest
# $ docker push continuumio/miniconda3:4.5.11
ENV LANG=C.UTF-8 LC_ALL=C.UTF-8
ENV PATH /opt/conda/bin:$PATH
RUN apt-get update --fix-missing && \
apt-get install -y wget bzip2 ca-certificates curl git && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-4.5.11-Linux-x86_64.sh -O ~/miniconda.sh && \
/bin/bash ~/miniconda.sh -b -p /opt/conda && \
rm ~/miniconda.sh && \
/opt/conda/bin/conda clean -tipsy && \
ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && \
echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && \
echo "conda activate base" >> ~/.bashrc
ENV TINI_VERSION v0.16.1
ADD https://github.com/krallin/tini/releases/download/${TINI_VERSION}/tini /usr/bin/tini
RUN chmod +x /usr/bin/tini
ENTRYPOINT [ "/usr/bin/tini", "--" ]
CMD [ "/bin/bash" ]
Building and running the container works just fine. For reference, here is the output of conda info
in the container:
(base) root@def48bd1ed5d:/# conda info
active environment : base
active env location : /opt/conda
shell level : 1
user config file : /root/.condarc
populated config files :
conda version : 4.5.11
conda-build version : not installed
python version : 3.7.0.final.0
base environment : /opt/conda (writable)
channel URLs : https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/free/linux-64
https://repo.anaconda.com/pkgs/free/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
https://repo.anaconda.com/pkgs/pro/linux-64
https://repo.anaconda.com/pkgs/pro/noarch
package cache : /opt/conda/pkgs
/root/.conda/pkgs
envs directories : /opt/conda/envs
/root/.conda/envs
platform : linux-64
user-agent : conda/4.5.11 requests/2.19.1 CPython/3.7.0 Linux/4.4.0-187-generic debian/10 glibc/2.28
UID:GID : 0:0
netrc file : None
offline mode : False
The problem appears whenever I try to use conda
to install a module, for example conda install jupyter -y
. The process starts and at some point during the installation I get this error:
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
Traceback (most recent call last):
File "/opt/conda/bin/conda", line 7, in <module>
from conda.cli import main
ModuleNotFoundError: No module named 'conda'
(base) root@def48bd1ed5d:/#
After this, it seems the installation is corrupeted. If I try to use the conda
command to call for exmaple conda info
again, I get the same error:
(base) root@def48bd1ed5d:/# conda info
Traceback (most recent call last):
File "/opt/conda/bin/conda", line 7, in <module>
from conda.cli import main
ModuleNotFoundError: No module named 'conda'
(base) root@def48bd1ed5d:/#
from No module named conda in Docker
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