Monday, 30 October 2023

How can I convert a Union type into a tensor type?

I want to convert a tab-delimited text into a 2D tensor object so that I can feed the data into a CNN.

What is the proper way to do this?

I wrote the following:

from typing import List, Union, cast
import tensorflow as tf

CellType = Union[str, float, int, bool]
RowType = List[CellType]

# Mapping Python types to TensorFlow data types
TF_DATA_TYPES = {
    str: tf.string,
    float: tf.float32,
    int: tf.int32,
    bool: tf.bool
}

def convert_string_to_tensorflow_object(data_string):
    # Split the string into lines
    linesStringList1d: List[str] = data_string.strip().split('\n')

    # Split each line into columns
    dataStringList2d: List[List[str]] = []
    for line in linesStringList1d:
        rowItem: List[str] = line.split(' ')
        dataStringList2d.append(rowItem)

    # Convert the data to TensorFlow tensors
    listOfRows: List[RowType] = []
    for rowItem in dataStringList2d:
        oneRow: RowType = []
        for stringItem in rowItem:
            oneRow.append(cast(CellType, stringItem))
        listOfRows.append(oneRow)

    # Get the TensorFlow data type based on the Python type of CellType
    tf_data_type = TF_DATA_TYPES[type(CellType)]

    listOfRows = tf.constant(listOfRows, dtype=tf_data_type)

    # Create a TensorFlow dataset
    return listOfRows

if __name__ == "__main__":
    # Example usage
    data_string: str = """
    1 ASN C  7.042   9.118  0.000 1 1 1 1  1  0
    2 LEU H  5.781   5.488  7.470 0 0 0 0  1  0
    3 THR H  5.399   5.166  6.452 0 0 0 0  0  0
    4 GLU H  5.373   4.852  6.069 0 0 0 0  1  0
    5 LEU H  5.423   5.164  6.197 0 0 0 0  2  0
    """

    tensorflow_dataset = convert_string_to_tensorflow_object(data_string)

    print(tensorflow_dataset)

Output:

C:\Users\pc\AppData\Local\Programs\Python\Python311\python.exe C:/git/heca_v2~~2/src/cnn_lib/convert_string_to_tensorflow_object.py
Traceback (most recent call last):
  File "C:\git\heca_v2~~2\src\cnn_lib\convert_string_to_tensorflow_object.py", line 51, in <module>
    tensorflow_dataset = convert_string_to_tensorflow_object(data_string)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\git\heca_v2~~2\src\cnn_lib\convert_string_to_tensorflow_object.py", line 34, in convert_string_to_tensorflow_object
    tf_data_type = TF_DATA_TYPES[type(CellType)]
                   ~~~~~~~~~~~~~^^^^^^^^^^^^^^^^
KeyError: <class 'typing._UnionGenericAlias'>

Process finished with exit code 1

Can I resolve the error?



from How can I convert a Union type into a tensor type?

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