Writing xarray multiindex data in chunks

I am trying to efficiently restructure a large multidimentional dataset. Let assume I have a number of remotely sensed images over time with a number of bands with coordinates x y for pixel location, time for time of image acquisition, and band for different data collected.

In my use case lets assume the xarray coord lengths are roughly x (3000), y (3000), time (10), with bands (40) of floating point data. So 100gb+ of data.

I have been trying to work from this example but I am having trouble translating it to this case.

Small dataset example

NOTE: the actual data is much larger than this example.

import numpy as np
import dask.array as da
import xarray as xr

nrows = 100
ncols = 200
row_chunks = 50
col_chunks = 50

data = da.random.random(size=(1, nrows, ncols), chunks=(1, row_chunks, col_chunks))

def create_band(data, x, y, band_name):

    return xr.DataArray(data,
                        dims=('band', 'y', 'x'),
                        coords={'band': [band_name],
                                'y': y,
                                'x': x})

def create_coords(data, left, top, celly, cellx):
    nrows = data.shape[-2]
    ncols = data.shape[-1]
    right = left + cellx*ncols
    bottom = top - celly*nrows
    x = np.linspace(left, right, ncols) + cellx/2.0
    y = np.linspace(top, bottom, nrows) - celly/2.0
    
    return x, y

x, y = create_coords(data, 1000, 2000, 30, 30)

src = []

for time in ['t1', 't2', 't3']:

    src_t = xr.concat([create_band(data, x, y, band) for band in ['blue', 'green', 'red', 'nir']], dim='band')\
                    .expand_dims(dim='time')\
                    .assign_coords({'time': [time]})
    
    src.append(src_t)

src = xr.concat(src, dim='time')

print(src)


<xarray.DataArray 'random_sample-5840d8564d778d573dd403f27c3f47a5' (time: 3, band: 4, y: 100, x: 200)>
dask.array<concatenate, shape=(3, 4, 100, 200), dtype=float64, chunksize=(1, 1, 50, 50), chunktype=numpy.ndarray>
Coordinates:
  * x        (x) float64 1.015e+03 1.045e+03 1.075e+03 ... 6.985e+03 7.015e+03
  * band     (band) object 'blue' 'green' 'red' 'nir'
  * y        (y) float64 1.985e+03 1.955e+03 1.924e+03 ... -984.7 -1.015e+03
  * time     (time) object 't1' 't2' 't3'

Restructured - stacked and transposed

I need to store the output of the following:

print(src.stack(sample=('y','x','time')).T)

<xarray.DataArray 'random_sample-5840d8564d778d573dd403f27c3f47a5' (sample: 60000, band: 4)>
dask.array<transpose, shape=(60000, 4), dtype=float64, chunksize=(3600, 1), chunktype=numpy.ndarray>
Coordinates:
  * band     (band) object 'blue' 'green' 'red' 'nir'
  * sample   (sample) MultiIndex
  - y        (sample) float64 1.985e+03 1.985e+03 ... -1.015e+03 -1.015e+03
  - x        (sample) float64 1.015e+03 1.015e+03 ... 7.015e+03 7.015e+03
  - time     (sample) object 't1' 't2' 't3' 't1' 't2' ... 't3' 't1' 't2' 't3'

I am hoping to use dask and xarray to write the result to disk (ideally hdf, but hdf can't store multiindex created by stacking multiple coords, in this case x,y,time), or in a format accessible for open_mfdataset since I will need to use lazy loading.

At this point I am just hoping for some good ideas. Thanks!

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